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 | Acceso al texto completo restringido a Biblioteca INIA Las Brujas. Por información adicional contacte bibliolb@inia.org.uy. |
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Biblioteca (s) : |
INIA Las Brujas. |
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Fecha : |
26/11/2015 |
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Actualizado : |
25/11/2019 |
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Tipo de producción científica : |
Artículos en Revistas Indexadas Internacionales |
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Autor : |
MASUDA, Y.; AGUILAR, I.; TSURUTA, S.; MISZTAL, I. |
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Afiliación : |
Y. MASUDA, Universidad de Georgia (UG); Obihiro University of Agriculture and Veterinary Medicine (Japón); IGNACIO AGUILAR GARCIA, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; SHOGO TSURUTA, Universidad de Georgia (UG); IGNACY MISZTAL, Universidad de Georgia (UG). |
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Título : |
Technical note: Acceleration of sparse operations for average-information REML analyses with supernodal methods and sparse-storage refinements. |
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Fecha de publicación : |
2015 |
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Fuente / Imprenta : |
Journal of Animal Science, 2015, v. 93, p. 4670 - 4674. Published October 9, 2015 |
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DOI : |
10.2527/jas.2015-9395 |
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Idioma : |
Inglés |
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Notas : |
Article history: Received June 8, 2015.; Accepted August 7, 2015.
1. We acknowledge the work by François Guillaume in programming a hash function. We greatly appreciate the work of the two anonymous reviewers.
2. The AIREMLF90 program with a sparse package YAMS, along with a manual, is available at http://nce.ads.uga.edu. The YAMS package is available on request for academic or noncommercial purposes by contacting the corresponding author. |
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Contenido : |
ABSTRACT.
The objective of this study was to remove bottlenecks generally found in a computer program for average-information REML. The refinements included improvements to setting-up mixed-model equations on a hash table with a faster hash function as sparse matrix storage, changing sparse structures in calculation of traces, and replacing a sparse matrix
package using traditional methods (FSPAK) with a new package using supernodal methods (YAMS); the latter package quickly processed sparse matrices containing large, dense blocks. Comparisons included 23 models with data sets from broiler, swine, beef, and dairy cattle. Models included single-trait, multiple-trait, maternal, and random regression models with phenotypic data; selected models used genomic information in a singlestep approach. Setting-up mixed model equations was completed without abnormal termination in all analyses. Calculations in traces were accelerated with a hash format, especially for models with a genomic relationship matrix, and the maximum speed was 67 times faster. Computations with YAMS were, on average, more than 10 times faster than with FSPAK and had greater advantages for large data and more complicated models including multiple traits, random regressions, and genomic effects. These refinements can be applied to general average-information REML programs.
© 2015 American Society of Animal Science. All rights reserved. |
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Palabras claves : |
AVERAGE-INFORMATION REML; HASH FORMAT; SPARSE MATRIX; SPARSE PACKAGES. |
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Thesagro : |
MODELOS DE SIMULACIÓN. |
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Asunto categoría : |
L10 Genética y mejoramiento animal |
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Marc : |
LEADER 02649naa a2200241 a 4500
001 1054007
005 2019-11-25
008 2015 bl uuuu u00u1 u #d
024 7 $a10.2527/jas.2015-9395$2DOI
100 1 $aMASUDA, Y.
245 $aTechnical note$bAcceleration of sparse operations for average-information REML analyses with supernodal methods and sparse-storage refinements.$h[electronic resource]
260 $c2015
500 $aArticle history: Received June 8, 2015.; Accepted August 7, 2015. 1. We acknowledge the work by François Guillaume in programming a hash function. We greatly appreciate the work of the two anonymous reviewers. 2. The AIREMLF90 program with a sparse package YAMS, along with a manual, is available at http://nce.ads.uga.edu. The YAMS package is available on request for academic or noncommercial purposes by contacting the corresponding author.
520 $aABSTRACT. The objective of this study was to remove bottlenecks generally found in a computer program for average-information REML. The refinements included improvements to setting-up mixed-model equations on a hash table with a faster hash function as sparse matrix storage, changing sparse structures in calculation of traces, and replacing a sparse matrix package using traditional methods (FSPAK) with a new package using supernodal methods (YAMS); the latter package quickly processed sparse matrices containing large, dense blocks. Comparisons included 23 models with data sets from broiler, swine, beef, and dairy cattle. Models included single-trait, multiple-trait, maternal, and random regression models with phenotypic data; selected models used genomic information in a singlestep approach. Setting-up mixed model equations was completed without abnormal termination in all analyses. Calculations in traces were accelerated with a hash format, especially for models with a genomic relationship matrix, and the maximum speed was 67 times faster. Computations with YAMS were, on average, more than 10 times faster than with FSPAK and had greater advantages for large data and more complicated models including multiple traits, random regressions, and genomic effects. These refinements can be applied to general average-information REML programs. © 2015 American Society of Animal Science. All rights reserved.
650 $aMODELOS DE SIMULACIÓN
653 $aAVERAGE-INFORMATION REML
653 $aHASH FORMAT
653 $aSPARSE MATRIX
653 $aSPARSE PACKAGES
700 1 $aAGUILAR, I.
700 1 $aTSURUTA, S.
700 1 $aMISZTAL, I.
773 $tJournal of Animal Science, 2015$gv. 93, p. 4670 - 4674. Published October 9, 2015
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Registro original : |
INIA Las Brujas (LB) |
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Registro completo
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Biblioteca (s) : |
INIA Las Brujas. |
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Fecha actual : |
21/02/2014 |
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Actualizado : |
13/11/2018 |
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Autor : |
SUH (SOCIEDAD URUGUAYA DE HORTICULTURA); COLHOR (CONFEDERACIÓN LATINOAMERICANA DE HORTICULTURA); CONGRESO IBEROAMERICANO, 1.; CONGRESO LATINOAMERICANO, 5.; CONGRESO NACIONAL DE HORTICULTURA, 4 . MARZO 23-27, MONTEVIDEO. |
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Título : |
Resumenes. |
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Fecha de publicación : |
1992 |
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Fuente / Imprenta : |
Montevideo (Uruguay): SUH ; COLHOR, 1992. |
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Páginas : |
169p. |
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Idioma : |
Español |
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Thesagro : |
APLICACION DE ABONOS; BIOTECNOLOGIA VEGETAL; CONTROL DE ENFERMEDADES; CONTROL DE PLAGAS; CONTROL QUIMICO; COSECHA; ENFERMEDADES DE LAS PLANTAS; EXTENSION; FISIOLOGIA VEGETAL; FITOMEJORAMIENTO; GERMOPLASMA; HORTICULTURA; MANEJO DEL CULTIVO; MANEJO DEL SUELO; MERCADEO; MERCADOS MUNDIALES; NECESIDADES DE LAS PLANTAS; PLAGAS DE PLANTAS; PLAGUICIDAS; PROPAGACION DE PLANTAS; RIEGO; SUSTANCIAS DE CRECIMIENTO VEGETAL; TECNOLOGIA POSTCOSECHA; TRANSFERENCIA DE TECNOLOGIA. |
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Asunto categoría : |
-- |
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URL : |
http://www.ainfo.inia.uy/digital/bitstream/item/11983/1/congreso-horticultura-4o.-1992.pdf
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Marc : |
LEADER 01322nam a2200421 a 4500
001 1009615
005 2018-11-13
008 1992 bl uuuu u00u1 u #d
100 1 $aSUH (SOCIEDAD URUGUAYA DE HORTICULTURA)
245 $aResumenes.
260 $aMontevideo (Uruguay): SUH ; COLHOR$c1992
300 $a169p.
650 $aAPLICACION DE ABONOS
650 $aBIOTECNOLOGIA VEGETAL
650 $aCONTROL DE ENFERMEDADES
650 $aCONTROL DE PLAGAS
650 $aCONTROL QUIMICO
650 $aCOSECHA
650 $aENFERMEDADES DE LAS PLANTAS
650 $aEXTENSION
650 $aFISIOLOGIA VEGETAL
650 $aFITOMEJORAMIENTO
650 $aGERMOPLASMA
650 $aHORTICULTURA
650 $aMANEJO DEL CULTIVO
650 $aMANEJO DEL SUELO
650 $aMERCADEO
650 $aMERCADOS MUNDIALES
650 $aNECESIDADES DE LAS PLANTAS
650 $aPLAGAS DE PLANTAS
650 $aPLAGUICIDAS
650 $aPROPAGACION DE PLANTAS
650 $aRIEGO
650 $aSUSTANCIAS DE CRECIMIENTO VEGETAL
650 $aTECNOLOGIA POSTCOSECHA
650 $aTRANSFERENCIA DE TECNOLOGIA
700 1 $aCOLHOR (CONFEDERACIÓN LATINOAMERICANA DE HORTICULTURA)
700 1 $aCONGRESO IBEROAMERICANO, 1.; CONGRESO LATINOAMERICANO, 5.; CONGRESO NACIONAL DE HORTICULTURA, 4 . MARZO 23-27, MONTEVIDEO.
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